"No. Notice what happens when people use Rinnegan: they can't turn it off. EdoMadara still has Rinnegan eyes despite not using them for quite some time and the same goes for Nagato and Obito. If that Rinnegan was indeed from the replacement eye, it would show, but it didn't."
Actually Madara can switch his eyes from SG, EMS to RG they simply don't stay the same..because his eyes actually evolved...Obito didn't evolve his eyes he simply took Madara's old pair.... and in fact only took one to use with his SG....